cxUsReconstructionFileReader.h

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/*=========================================================================
This file is part of CustusX, an Image Guided Therapy Application.
                 
Copyright (c) SINTEF Department of Medical Technology.
All rights reserved.
                 
CustusX is released under a BSD 3-Clause license.
                 
See Lisence.txt (https://github.com/SINTEFMedtek/CustusX/blob/master/License.txt) for details.
=========================================================================*/
#ifndef CXUSRECONSTRUCTIONFILEREADER_H_
#define CXUSRECONSTRUCTIONFILEREADER_H_

#include "cxResourceExport.h"

#include <boost/shared_ptr.hpp>
#include <QString>
#include "cxTransform3D.h"
#include "ProbeXmlConfigParserImpl.h"
#include "cxProbeSector.h"
#include "cxForwardDeclarations.h"
#include "cxUSReconstructInputData.h"

namespace cx
{

class cxResource_EXPORT UsReconstructionFileReader
{
public:

public:
        UsReconstructionFileReader(FileManagerServicePtr fileManager);

        USReconstructInputData readAllFiles(QString fileName, QString calFilesPath = "");

        std::vector<TimedPosition> readFrameTimestamps(QString fileName);
        static std::pair<QString, ProbeDefinition>  readProbeDefinitionFromFile(QString mhdFileName);

private:
        bool valid(USReconstructInputData input);
        std::vector<TimedPosition> readPositions(QString fileName);
        bool readMaskFile(QString mhdFileName, ImagePtr mask);
        USFrameDataPtr readUsDataFile(QString mhdFileName);

        void readPositionFile(QString posFile, bool alsoReadTimestamps, std::vector<TimedPosition>* timedPos);
        void readTimeStampsFile(QString fileName, std::vector<TimedPosition>* timedPos);
        void readCustomMhdTags(QString mhdFileName, QStringList* probeConfigPath, QString* calFileName);
        ProbeXmlConfigParser::Configuration readProbeConfiguration(QString calFilesPath, QStringList probeConfigPath);
        std::pair<QString, ProbeDefinition>  readProbeDefinitionBackwardsCompatible(QString mhdFileName, QString calFilesPath);

//      ImagePtr createMaskFromConfigParams(USReconstructInputData data);
        ImagePtr generateMask(USReconstructInputData data);

        FileManagerServicePtr mFileManagerService;
};

typedef boost::shared_ptr<UsReconstructionFileReader> UsReconstructionFileReaderPtr;

} // namespace cx

#endif /* CXUSRECONSTRUCTIONFILEREADER_H_ */