#include <cxBranchList.h>

Public Member Functions
	BranchList ()

virtual	~BranchList ()

void	addBranch (BranchPtr b)

void	deleteBranch (BranchPtr b)

void	deleteAllBranches ()

std::vector< BranchPtr >	getBranches ()

void	findBranchesInCenterline (Eigen::MatrixXd positions_r, bool sortByZindex=true)

void	selectGenerations (int maxGeneration)

void	findBronchoscopeRotation ()

void	calculateBronchoscopeRotation (BranchPtr branch)

void	smoothOrientations ()

void	smoothRadius ()

BranchPtr	findBranchWithLargestRadius ()

void	interpolateBranchPositions (double resolution)

void	smoothBranchPositions (int controlPointDistance)

void	excludeClosePositionsInCTCenterline (double minPointDistance)

void	markLungLap (QString name, Vector3D position)

void	setLapName (BranchPtr branch, QString name)

QString	findClosestLungLap (Vector3D position)

double	findDistance (Vector3D p1, Vector3D p2)

BranchPtr	findClosestBranch (Vector3D targetCoordinate_r)

BranchListPtr	removePositionsForLocalRegistration (Eigen::MatrixXd trackingPositions, double maxDistance)

vtkPolyDataPtr	createVtkPolyDataFromBranches (bool fullyConnected=false, bool straightBranches=false) const
	BranchList::createVtkPolyDataFromBranches Return a VtkPolyData object created from the branches in this object. More...

Detailed Description

Definition at line 28 of file cxBranchList.h.

Constructor & Destructor Documentation

◆ BranchList()

cx::BranchList::BranchList ( )

Definition at line 25 of file cxBranchList.cpp.

◆ ~BranchList()

cx::BranchList::~BranchList ( )

virtual

Definition at line 31 of file cxBranchList.cpp.

Member Function Documentation

◆ addBranch()

void cx::BranchList::addBranch ( BranchPtr b )

Definition at line 37 of file cxBranchList.cpp.

◆ calculateBronchoscopeRotation()

void cx::BranchList::calculateBronchoscopeRotation ( BranchPtr branch )

Definition at line 97 of file cxBranchList.cpp.

◆ createVtkPolyDataFromBranches()

vtkPolyDataPtr cx::BranchList::createVtkPolyDataFromBranches	(	bool	fullyConnected = `false`,
		bool	straightBranches = `false`
	)		const

BranchList::createVtkPolyDataFromBranches Return a VtkPolyData object created from the branches in this object.

Parameters

fullyConnected	The original version of this code created an object where there might be gaps between the end of parent and child branches. This parameter lets you make connections between the branches to fill these gaps. Note however, that this option gives strange results on many of the real centerlines tried. Not sure where the problem is. It works on the dummy centerline used in the unit test.
straightBranches	By using this parameter, you will include only the first and last points from a branch. Hence you will get straight branches in your polydata.

Returns: a vtkpolydata object of your branch tree.

Definition at line 546 of file cxBranchList.cpp.

◆ deleteAllBranches()

void cx::BranchList::deleteAllBranches ( )

Definition at line 57 of file cxBranchList.cpp.

◆ deleteBranch()

void cx::BranchList::deleteBranch ( BranchPtr b )

Definition at line 42 of file cxBranchList.cpp.

◆ excludeClosePositionsInCTCenterline()

void cx::BranchList::excludeClosePositionsInCTCenterline ( double minPointDistance )

Definition at line 454 of file cxBranchList.cpp.

◆ findBranchesInCenterline()

void cx::BranchList::findBranchesInCenterline	(	Eigen::MatrixXd	positions_r,
		bool	sortByZindex = `true`
	)

Definition at line 328 of file cxBranchList.cpp.

◆ findBranchWithLargestRadius()

BranchPtr cx::BranchList::findBranchWithLargestRadius ( )

Definition at line 222 of file cxBranchList.cpp.

◆ findBronchoscopeRotation()

void cx::BranchList::findBronchoscopeRotation ( )

Definition at line 90 of file cxBranchList.cpp.

◆ findClosestBranch()

BranchPtr cx::BranchList::findClosestBranch ( Vector3D targetCoordinate_r )

Definition at line 507 of file cxBranchList.cpp.

◆ findClosestLungLap()

QString cx::BranchList::findClosestLungLap ( Vector3D position )

Definition at line 490 of file cxBranchList.cpp.

◆ findDistance()

double cx::BranchList::findDistance	(	Vector3D	p1,
		Vector3D	p2
	)

Definition at line 496 of file cxBranchList.cpp.

◆ getBranches()

std::vector< BranchPtr > cx::BranchList::getBranches ( )

Definition at line 62 of file cxBranchList.cpp.

◆ interpolateBranchPositions()

void cx::BranchList::interpolateBranchPositions ( double resolution )

Definition at line 239 of file cxBranchList.cpp.

◆ markLungLap()

void cx::BranchList::markLungLap	(	QString	name,
		Vector3D	position
	)

Definition at line 475 of file cxBranchList.cpp.

◆ removePositionsForLocalRegistration()

BranchListPtr cx::BranchList::removePositionsForLocalRegistration	(	Eigen::MatrixXd	trackingPositions,
		double	maxDistance
	)

Definition at line 420 of file cxBranchList.cpp.

◆ selectGenerations()

void cx::BranchList::selectGenerations ( int maxGeneration )

Definition at line 67 of file cxBranchList.cpp.

◆ setLapName()

void cx::BranchList::setLapName	(	BranchPtr	branch,
		QString	name
	)

Definition at line 482 of file cxBranchList.cpp.

◆ smoothBranchPositions()

void cx::BranchList::smoothBranchPositions ( int controlPointDistance )

Definition at line 285 of file cxBranchList.cpp.

◆ smoothOrientations()

void cx::BranchList::smoothOrientations ( )

Definition at line 191 of file cxBranchList.cpp.

◆ smoothRadius()

void cx::BranchList::smoothRadius ( )

Definition at line 207 of file cxBranchList.cpp.

The documentation for this class was generated from the following files:

/mnt/bamboo/bamboo/buildagent/xml-data/build-dir/NN-NI-BU2/CX/CX/source/plugins/org.custusx.registration.method.bronchoscopy/cxBranchList.h
/mnt/bamboo/bamboo/buildagent/xml-data/build-dir/NN-NI-BU2/CX/CX/source/plugins/org.custusx.registration.method.bronchoscopy/cxBranchList.cpp

Public Member Functions