NorMIT-nav
22.09
An IGT application
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#include <cxBranchList.h>
Public Member Functions | |
BranchList () | |
virtual | ~BranchList () |
void | addBranch (BranchPtr b) |
void | deleteBranch (BranchPtr b) |
void | deleteAllBranches () |
std::vector< BranchPtr > | getBranches () |
void | findBranchesInCenterline (Eigen::MatrixXd positions_r, bool sortByZindex=true) |
void | selectGenerations (int maxGeneration) |
void | findBronchoscopeRotation () |
void | calculateBronchoscopeRotation (BranchPtr branch) |
void | smoothOrientations () |
void | smoothRadius () |
BranchPtr | findBranchWithLargestRadius () |
void | interpolateBranchPositions (double resolution) |
void | smoothBranchPositions (int controlPointDistance) |
void | excludeClosePositionsInCTCenterline (double minPointDistance) |
void | markLungLap (QString name, Vector3D position) |
void | setLapName (BranchPtr branch, QString name) |
QString | findClosestLungLap (Vector3D position) |
double | findDistance (Vector3D p1, Vector3D p2) |
BranchPtr | findClosestBranch (Vector3D targetCoordinate_r) |
BranchListPtr | removePositionsForLocalRegistration (Eigen::MatrixXd trackingPositions, double maxDistance) |
vtkPolyDataPtr | createVtkPolyDataFromBranches (bool fullyConnected=false, bool straightBranches=false) const |
BranchList::createVtkPolyDataFromBranches Return a VtkPolyData object created from the branches in this object. More... | |
Definition at line 28 of file cxBranchList.h.
cx::BranchList::BranchList | ( | ) |
Definition at line 25 of file cxBranchList.cpp.
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virtual |
Definition at line 31 of file cxBranchList.cpp.
void cx::BranchList::addBranch | ( | BranchPtr | b | ) |
Definition at line 37 of file cxBranchList.cpp.
void cx::BranchList::calculateBronchoscopeRotation | ( | BranchPtr | branch | ) |
Definition at line 97 of file cxBranchList.cpp.
vtkPolyDataPtr cx::BranchList::createVtkPolyDataFromBranches | ( | bool | fullyConnected = false , |
bool | straightBranches = false |
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) | const |
BranchList::createVtkPolyDataFromBranches Return a VtkPolyData object created from the branches in this object.
fullyConnected | The original version of this code created an object where there might be gaps between the end of parent and child branches. This parameter lets you make connections between the branches to fill these gaps. Note however, that this option gives strange results on many of the real centerlines tried. Not sure where the problem is. It works on the dummy centerline used in the unit test. |
straightBranches | By using this parameter, you will include only the first and last points from a branch. Hence you will get straight branches in your polydata. |
Definition at line 545 of file cxBranchList.cpp.
void cx::BranchList::deleteAllBranches | ( | ) |
Definition at line 57 of file cxBranchList.cpp.
void cx::BranchList::deleteBranch | ( | BranchPtr | b | ) |
Definition at line 42 of file cxBranchList.cpp.
void cx::BranchList::excludeClosePositionsInCTCenterline | ( | double | minPointDistance | ) |
Definition at line 453 of file cxBranchList.cpp.
void cx::BranchList::findBranchesInCenterline | ( | Eigen::MatrixXd | positions_r, |
bool | sortByZindex = true |
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) |
Definition at line 327 of file cxBranchList.cpp.
BranchPtr cx::BranchList::findBranchWithLargestRadius | ( | ) |
Definition at line 221 of file cxBranchList.cpp.
void cx::BranchList::findBronchoscopeRotation | ( | ) |
Definition at line 90 of file cxBranchList.cpp.
Definition at line 506 of file cxBranchList.cpp.
QString cx::BranchList::findClosestLungLap | ( | Vector3D | position | ) |
Definition at line 489 of file cxBranchList.cpp.
Definition at line 495 of file cxBranchList.cpp.
std::vector< BranchPtr > cx::BranchList::getBranches | ( | ) |
Definition at line 62 of file cxBranchList.cpp.
void cx::BranchList::interpolateBranchPositions | ( | double | resolution | ) |
Definition at line 238 of file cxBranchList.cpp.
void cx::BranchList::markLungLap | ( | QString | name, |
Vector3D | position | ||
) |
Definition at line 474 of file cxBranchList.cpp.
BranchListPtr cx::BranchList::removePositionsForLocalRegistration | ( | Eigen::MatrixXd | trackingPositions, |
double | maxDistance | ||
) |
Definition at line 419 of file cxBranchList.cpp.
void cx::BranchList::selectGenerations | ( | int | maxGeneration | ) |
Definition at line 67 of file cxBranchList.cpp.
void cx::BranchList::setLapName | ( | BranchPtr | branch, |
QString | name | ||
) |
Definition at line 481 of file cxBranchList.cpp.
void cx::BranchList::smoothBranchPositions | ( | int | controlPointDistance | ) |
Definition at line 284 of file cxBranchList.cpp.
void cx::BranchList::smoothOrientations | ( | ) |
Definition at line 190 of file cxBranchList.cpp.
void cx::BranchList::smoothRadius | ( | ) |
Definition at line 206 of file cxBranchList.cpp.