NorMIT-nav
22.09
An IGT application
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#include <cxAirwaysFilterService.h>
Public Member Functions | |
AirwaysFilter (VisServicesPtr services) | |
virtual | ~AirwaysFilter () |
virtual QString | getType () const |
virtual QString | getName () const |
virtual QString | getHelp () const |
bool | preProcess () |
virtual bool | execute () |
virtual bool | postProcess () |
void | setAirwaySegmentation (bool airwaySegmentation) |
void | setColoringAirways (bool coloringAirways) |
void | setVesselSegmentation (bool vesselSegmentation) |
Public Member Functions inherited from cx::FilterImpl | |
virtual | ~FilterImpl () |
virtual QString | getUid () const |
virtual void | initialize (QDomElement root, QString uid="") |
virtual std::vector< PropertyPtr > | getOptions () |
virtual std::vector< SelectDataStringPropertyBasePtr > | getInputTypes () |
virtual std::vector< SelectDataStringPropertyBasePtr > | getOutputTypes () |
virtual bool | hasPresets () |
virtual PresetsPtr | getPresets () |
virtual QDomElement | generatePresetFromCurrentlySetOptions (QString name) |
virtual void | setActive (bool on) |
Public Member Functions inherited from cx::Filter | |
Filter () | |
virtual | ~Filter () |
Protected Member Functions | |
void | segmentAirways (fast::ImageFileImporter::pointer importerPtr) |
bool | extractAirways (fast::AirwaySegmentation::pointer airwaySegmentationPtr) |
void | segmentLungs (fast::ImageFileImporter::pointer importerPtr) |
void | segmentVessels (fast::ImageFileImporter::pointer importerPtr) |
bool | extractBloodVessels (fast::LungSegmentation::pointer lungSegmentationPtr) |
bool | extractLungs (fast::LungSegmentation::pointer lungSegmentationPtr) |
bool | postProcessAirways () |
bool | postProcessLungs () |
bool | postProcessVessels () |
virtual void | createOptions () |
virtual void | createInputTypes () |
virtual void | createOutputTypes () |
Protected Member Functions inherited from cx::FilterImpl | |
FilterImpl (VisServicesPtr services) | |
ImagePtr | getCopiedInputImage (int index=0) |
void | updateThresholdFromImageChange (QString uid, DoublePropertyPtr threshold) |
void | updateThresholdPairFromImageChange (QString uid, DoublePairPropertyPtr threshold) |
PatientModelServicePtr | patientService () |
Additional Inherited Members | |
Public Slots inherited from cx::FilterImpl | |
virtual void | requestSetPresetSlot (QString name) |
Public Slots inherited from cx::Filter | |
virtual void | requestSetPresetSlot (QString name)=0 |
Signals inherited from cx::Filter | |
void | changed () |
Protected Attributes inherited from cx::FilterImpl | |
std::vector< SelectDataStringPropertyBasePtr > | mInputTypes |
std::vector< SelectDataStringPropertyBasePtr > | mOutputTypes |
std::vector< PropertyPtr > | mOptionsAdapters |
QDomElement | mOptions |
std::vector< DataPtr > | mCopiedInput |
QDomElement | mCopiedOptions |
bool | mActive |
VisServicesPtr | mServices |
Filter for airway segmentation and centerline extraction of a CT volume.
Algorithm written by Erik Smistad.
2020-01-15: Added segmentation of blood vessels and lungs. Erlend Fagertun hofstad
Definition at line 48 of file cxAirwaysFilterService.h.
cx::AirwaysFilter::AirwaysFilter | ( | VisServicesPtr | services | ) |
Definition at line 52 of file cxAirwaysFilterService.cpp.
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Definition at line 63 of file cxAirwaysFilterService.cpp.
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protectedvirtual |
Implements cx::FilterImpl.
Definition at line 669 of file cxAirwaysFilterService.cpp.
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protectedvirtual |
Implements cx::FilterImpl.
Definition at line 657 of file cxAirwaysFilterService.cpp.
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protectedvirtual |
Implements cx::FilterImpl.
Definition at line 679 of file cxAirwaysFilterService.cpp.
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Execute filter with the given inputs and produce an output. This method is threadable - can be executed in a secondary thread. Assumes preprocess has been called.
Implements cx::Filter.
Definition at line 156 of file cxAirwaysFilterService.cpp.
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Definition at line 248 of file cxAirwaysFilterService.cpp.
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Definition at line 334 of file cxAirwaysFilterService.cpp.
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Definition at line 389 of file cxAirwaysFilterService.cpp.
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Return a help text describing algorithm usage.
Implements cx::Filter.
Definition at line 76 of file cxAirwaysFilterService.cpp.
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Return a descriptive name for this algorithm.
Implements cx::Filter.
Definition at line 66 of file cxAirwaysFilterService.cpp.
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Return the type of this algorithm. Need to match id string in user documentation
Implements cx::Filter.
Definition at line 71 of file cxAirwaysFilterService.cpp.
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Perform postprocessing tasks and set result from calculation into the output adapters.
Must be called from the main thread. Assumes execute() has been called.
Implements cx::Filter.
Definition at line 426 of file cxAirwaysFilterService.cpp.
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because the segmented image is 0..1
Definition at line 452 of file cxAirwaysFilterService.cpp.
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because the segmented image is 0..1
Definition at line 500 of file cxAirwaysFilterService.cpp.
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because the segmented image is 0..1
Definition at line 538 of file cxAirwaysFilterService.cpp.
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Perform main thread preprocessing. Copies input data from options and the input adapters into thread-safe storage. Assumes getOptions(), getInputTypes(), getOutputTypes() has been called (this initializes options)
Reimplemented from cx::FilterImpl.
Definition at line 123 of file cxAirwaysFilterService.cpp.
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Definition at line 229 of file cxAirwaysFilterService.cpp.
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Definition at line 300 of file cxAirwaysFilterService.cpp.
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Definition at line 317 of file cxAirwaysFilterService.cpp.
void cx::AirwaysFilter::setAirwaySegmentation | ( | bool | airwaySegmentation | ) |
Definition at line 705 of file cxAirwaysFilterService.cpp.
void cx::AirwaysFilter::setColoringAirways | ( | bool | coloringAirways | ) |
Definition at line 710 of file cxAirwaysFilterService.cpp.
void cx::AirwaysFilter::setVesselSegmentation | ( | bool | vesselSegmentation | ) |
Definition at line 715 of file cxAirwaysFilterService.cpp.