cx::ElastixExecuter Class Reference

ElastiX command-line wrapper. More...

#include <cxElastixExecuter.h>

Inheritance diagram for cx::ElastixExecuter:

Public Member Functions
	ElastixExecuter (RegServicesPtr services, QObject *parent=NULL)
virtual	~ElastixExecuter ()
void	setDisplayProcessMessages (bool on)
bool	setInput (QString application, DataPtr fixed, DataPtr moving, QString outdir, QStringList parameterfiles)
virtual void	execute ()
virtual bool	isFinished () const
virtual bool	isRunning () const
Transform3D	getAffineResult_mMf (bool *ok=0)
QString	getNonlinearResultVolume (bool *ok=0)
Public Member Functions inherited from cx::TimedBaseAlgorithm
	TimedBaseAlgorithm (QString product, int secondsBetweenAnnounce)
virtual	~TimedBaseAlgorithm ()
virtual QString	getProduct () const

Additional Inherited Members
Signals inherited from cx::TimedBaseAlgorithm
void	aboutToStart ()
	emitted at start of execute. Use to perform preprocessing More...
void	started (int maxSteps)
	emitted at start of run. More...
void	finished ()
	should be emitted when at the end of postProcessingSlot More...
void	productChanged ()
	emitted whenever product string has changed More...
Protected Slots inherited from cx::TimedBaseAlgorithm
virtual void	finishedSlot ()
virtual void	postProcessingSlot ()
Protected Member Functions inherited from cx::TimedBaseAlgorithm
void	startTiming ()
void	stopTiming ()
QString	getSecondsPassedAsString () const
Protected Attributes inherited from cx::TimedBaseAlgorithm
bool	mUseDefaultMessages

Detailed Description

ElastiX command-line wrapper.

This class wraps a call to the ElastiX library, http://elastix.isi.uu.nl .

Call the run method to execute an elastiX registration, wait for the signal finished(), then get the results using the getters.

Date

Feb 4, 2012

Author

Christian Askeland, SINTEF

Definition at line 49 of file cxElastixExecuter.h.

Constructor & Destructor Documentation

cx::ElastixExecuter::ElastixExecuter	(	RegServicesPtr	services,
		QObject *	parent = NULL
	)

Definition at line 32 of file cxElastixExecuter.cpp.

cx::ElastixExecuter::~ElastixExecuter ( )

virtual

Definition at line 42 of file cxElastixExecuter.cpp.

Member Function Documentation

void cx::ElastixExecuter::execute ( )

virtual

Execute the algorithm. Parts of the execution can be in another thread, thus the call usually returns after preprocessing is complete. The exec starts by emitting aboutToStart(), which can be used by callers to set input arguments.

Implements cx::TimedBaseAlgorithm.

Definition at line 114 of file cxElastixExecuter.cpp.

Transform3D cx::ElastixExecuter::getAffineResult_mMf

(

bool *

ok = 0

)

Return the result of the latest registration as a linear transform mMf.

Read the descriptions in writeInitTransformToElastixfile() and getAffineResult_mmMff for a full discussion.

Definition at line 288 of file cxElastixExecuter.cpp.

QString cx::ElastixExecuter::getNonlinearResultVolume

(

bool *

ok = 0

)

Definition at line 362 of file cxElastixExecuter.cpp.

bool cx::ElastixExecuter::isFinished ( ) const

virtual

Returns true after the finished() signal is emitted.

Implements cx::TimedBaseAlgorithm.

Definition at line 119 of file cxElastixExecuter.cpp.

bool cx::ElastixExecuter::isRunning ( ) const

virtual

Returns true if preprocess is started and postprocess not complete. (Right after aboutToStart, right before finished())

Implements cx::TimedBaseAlgorithm.

Definition at line 125 of file cxElastixExecuter.cpp.

void cx::ElastixExecuter::setDisplayProcessMessages

(

bool

on

)

Definition at line 48 of file cxElastixExecuter.cpp.

bool cx::ElastixExecuter::setInput	(	QString	application,
		DataPtr	fixed,
		DataPtr	moving,
		QString	outdir,
		QStringList	parameterfiles
	)

Definition at line 62 of file cxElastixExecuter.cpp.

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The documentation for this class was generated from the following files:

• /media/dev/bamboodrive/b/xml-data/build-dir/FX-NOS-JOB1/CX/CX/source/plugins/org.custusx.registration.method.commandline/logic/cxElastixExecuter.h
• /media/dev/bamboodrive/b/xml-data/build-dir/FX-NOS-JOB1/CX/CX/source/plugins/org.custusx.registration.method.commandline/logic/cxElastixExecuter.cpp