cxReconstructCore.h

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/*=========================================================================
This file is part of CustusX, an Image Guided Therapy Application.
                 
Copyright (c) SINTEF Department of Medical Technology.
All rights reserved.
                 
CustusX is released under a BSD 3-Clause license.
                 
See Lisence.txt (https://github.com/SINTEFMedtek/CustusX/blob/master/License.txt) for details.
=========================================================================*/

#ifndef CXRECONSTRUCTCORE_H_
#define CXRECONSTRUCTCORE_H_

#include "org_custusx_usreconstruction_Export.h"

#include "cxBoundingBox3D.h"
#include "cxForwardDeclarations.h"
#include "cxReconstructedOutputVolumeParams.h"

namespace cx
{
class ReconstructionMethodService;
//typedef class ReconstructionMethodService* ReconstructionMethodServicePtr;

typedef boost::shared_ptr<class ReconstructCore> ReconstructCorePtr;

class org_custusx_usreconstruction_EXPORT ReconstructCore
{
public:
        struct InputParams
        {
                InputParams() :
                        mExtraTimeCalibration(0),
                        mAlignTimestamps(false),
            mPositionThinning(false),
            mPosFilterStrength(0),
            mMaskReduce(0),
                        mAngio(false),
                        mMaxOutputVolumeSize(1024*1024)
                {}
                double mExtraTimeCalibration;
                bool mAlignTimestamps;
        bool mPositionThinning;
        double mPosFilterStrength;
        double mMaskReduce;
                QString mOrientation;

                QString mAlgorithmUid;
                QDomElement mAlgoSettings;
//              QString mOutputRelativePath;///< Relative path to the output image
//              QString mOutputBasePath;///< Global path where the relative path starts, for the output image
                QString mShaderPath; 
                bool mAngio; 
                QString mTransferFunctionPreset;
                double mMaxOutputVolumeSize;
        };

        ReconstructCore(PatientModelServicePtr patientModelService);
        virtual ~ReconstructCore();

        // used for reconstruction algo
        void initialize(InputParams input, ReconstructionMethodService* algorithm);
        void initialize(ProcessedUSInputDataPtr fileData, OutputVolumeParams outputVolumeParams);
        ImagePtr reconstruct();
        void threadedPreReconstruct();
        void threadedReconstruct();
        void threadedPostReconstruct();
        ImagePtr getOutput();

        // published helper methods, also needed for parameter display outside of reconstruction execution:
        InputParams getInputParams() { return mInput; }

private:
        bool validInputData() const;
        QString generateOutputUid();
        QString generateImageName(QString uid) const;

        vtkImageDataPtr generateRawOutputVolume();
        ImagePtr generateOutputVolume(vtkImageDataPtr rawOutput);

        // input data
        InputParams mInput;
        ProcessedUSInputDataPtr mFileData;

        // generated data
        ReconstructionMethodService* mAlgorithm;
        vtkImageDataPtr mRawOutput; 
        ImagePtr mOutput;
        OutputVolumeParams mOutputVolumeParams;
        bool mSuccess;
        PatientModelServicePtr mPatientModelService;
};

} /* namespace cx */
#endif /* CXRECONSTRUCTCORE_H_ */