cxDicomConverter.h

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/*=========================================================================
This file is part of CustusX, an Image Guided Therapy Application.
                 
Copyright (c) SINTEF Department of Medical Technology.
All rights reserved.
                 
CustusX is released under a BSD 3-Clause license.
                 
See Lisence.txt (https://github.com/SINTEFMedtek/CustusX/blob/master/License.txt) for details.
=========================================================================*/

#ifndef CXDICOMCONVERTER_H_
#define CXDICOMCONVERTER_H_

#include "cxImage.h"
#include "org_custusx_dicom_Export.h"
class ctkDICOMDatabase;

namespace cx
{
typedef boost::shared_ptr<class DicomImageReader> DicomImageReaderPtr;

class org_custusx_dicom_EXPORT DicomConverter
{
public:
        DicomConverter();
        virtual ~DicomConverter();

        void setDicomDatabase(ctkDICOMDatabase* database);
        ImagePtr convertToImage(QString seriesUid);

private:
        QString generateUid(DicomImageReaderPtr reader);
        QString generateName(DicomImageReaderPtr reader);
        std::map<double, ImagePtr> sortImagesAlongDirection(std::vector<ImagePtr> images, Vector3D  e_sort);
        ImagePtr mergeSlices(std::map<double, ImagePtr> sorted) const;
        double getMeanSliceDistance(std::map<double, ImagePtr> sorted) const;
        bool slicesFormRegularGrid(std::map<double, ImagePtr> sorted, Vector3D e_sort) const;
        // ignoreLocalizerImages is a tag to ignore special images. For now only localizer images are ignored
        ImagePtr createCxImageFromDicomFile(QString filename, bool ignoreLocalizerImages);
        std::vector<ImagePtr> createImages(QStringList files);
    QString convertToValidName(QString text) const;

        ctkDICOMDatabase* mDatabase;
};

} /* namespace cx */
#endif /* CXDICOMCONVERTER_H_ */