cxUsReconstructionFileReader.h

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/*=========================================================================
This file is part of CustusX, an Image Guided Therapy Application.

Copyright (c) 2008-2014, SINTEF Department of Medical Technology
All rights reserved.

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modification, are permitted provided that the following conditions are met:

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   this list of conditions and the following disclaimer.

2. Redistributions in binary form must reproduce the above copyright notice, 
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   and/or other materials provided with the distribution.

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   may be used to endorse or promote products derived from this software 
   without specific prior written permission.

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 
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#ifndef CXUSRECONSTRUCTIONFILEREADER_H_
#define CXUSRECONSTRUCTIONFILEREADER_H_

#include "cxResourceExport.h"

#include <boost/shared_ptr.hpp>
#include <QString>
#include "cxTransform3D.h"
#include "ProbeXmlConfigParserImpl.h"
#include "cxProbeSector.h"
#include "cxForwardDeclarations.h"
#include "cxUSReconstructInputData.h"

namespace cx
{

class cxResource_EXPORT UsReconstructionFileReader
{
public:

public:
        UsReconstructionFileReader();

        USReconstructInputData readAllFiles(QString fileName, QString calFilesPath = "");

        std::vector<TimedPosition> readFrameTimestamps(QString fileName);
        static std::pair<QString, ProbeDefinition>  readProbeDefinitionFromFile(QString mhdFileName);

private:
        bool valid(USReconstructInputData input);
        std::vector<TimedPosition> readPositions(QString fileName);
        bool readMaskFile(QString mhdFileName, ImagePtr mask);
        USFrameDataPtr readUsDataFile(QString mhdFileName);

        void readPositionFile(QString posFile, bool alsoReadTimestamps, std::vector<TimedPosition>* timedPos);
        void readTimeStampsFile(QString fileName, std::vector<TimedPosition>* timedPos);
        void readCustomMhdTags(QString mhdFileName, QStringList* probeConfigPath, QString* calFileName);
        ProbeXmlConfigParser::Configuration readProbeConfiguration(QString calFilesPath, QStringList probeConfigPath);
        std::pair<QString, ProbeDefinition>  readProbeDefinitionBackwardsCompatible(QString mhdFileName, QString calFilesPath);

//      ImagePtr createMaskFromConfigParams(USReconstructInputData data);
        ImagePtr generateMask(USReconstructInputData data);
};

typedef boost::shared_ptr<UsReconstructionFileReader> UsReconstructionFileReaderPtr;

} // namespace cx

#endif /* CXUSRECONSTRUCTIONFILEREADER_H_ */