cxPNNReconstructionMethodService.h

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/*=========================================================================
This file is part of CustusX, an Image Guided Therapy Application.

Copyright (c) 2008-2014, SINTEF Department of Medical Technology
All rights reserved.

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#ifndef CXPNNRECONSTRUCTIONMETHODSERVICE_H_
#define CXPNNRECONSTRUCTIONMETHODSERVICE_H_

#include "cxReconstructionMethodService.h"
#include "org_custusx_usreconstruction_pnn_Export.h"
#include "cxTransform3D.h"
class ctkPluginContext;

namespace cx
{

class org_custusx_usreconstruction_pnn_EXPORT PNNReconstructionMethodService : public ReconstructionMethodService
{
        Q_INTERFACES(cx::ReconstructionMethodService)
public:
        PNNReconstructionMethodService(ctkPluginContext* context);
        virtual ~PNNReconstructionMethodService();

        virtual QString getName() const;

        virtual std::vector<PropertyPtr> getSettings(QDomElement root);
        virtual bool reconstruct(ProcessedUSInputDataPtr input, vtkImageDataPtr outputData, QDomElement settings);


private:
        DoublePropertyPtr getInterpolationStepsOption(QDomElement root);
        bool validPixel(int x, int y, const Eigen::Array3i& dims, unsigned char* rawPointer)
        {
                return (x >= 0) && (x < dims[0]) && (y >= 0) && (y < dims[1]) && (rawPointer[x + y * dims[0]] != 0);
        }

        bool validVoxel(int x, int y, int z, const int* dims)
        {
                return (x >= 0) && (x < dims[0]) && (y >= 0) && (y < dims[1]) && (z >= 0) && (z < dims[2]);
        }

        void interpolate(ImagePtr inputData, vtkImageDataPtr outputData, QDomElement settings);
        vtkImageDataPtr createMask(vtkImageDataPtr inputData);
        void fillHole(unsigned char *inputPointer, unsigned char *outputPointer, int x, int y, int z, const Eigen::Array3i& dim, int interpolationSteps);


};
//typedef boost::shared_ptr<PNNReconstructionMethodService> PNNReconstructionMethodService*;

} /* namespace cx */

#endif /* CXPNNRECONSTRUCTIONMETHODSERVICE_H_ */