cxBranch.h

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/*=========================================================================
This file is part of CustusX, an Image Guided Therapy Application.

Copyright (c) SINTEF Department of Medical Technology.
All rights reserved.

CustusX is released under a BSD 3-Clause license.

See Lisence.txt (https://github.com/SINTEFMedtek/CustusX/blob/master/License.txt) for details.
=========================================================================*/
#ifndef BRANCH_H_
#define BRANCH_H_

#include <vector>
#include "cxMesh.h"
#include "cxVector3D.h"
#include "org_custusx_registration_method_bronchoscopy_Export.h"

typedef std::vector<double> dVector;
typedef std::vector<dVector> dVectors;


namespace cx
{

class org_custusx_registration_method_bronchoscopy_EXPORT Branch;
typedef boost::shared_ptr<class Branch> BranchPtr;
typedef std::vector<BranchPtr> branchVector;

class Branch
{
        Eigen::MatrixXd mPositions;
        Eigen::MatrixXd mOrientations;
        Eigen::VectorXd mRadius;
        branchVector mChildBranches;
        BranchPtr mParentBranch;
        double mBronchoscopeRotation = 0;
public:
        Branch();
        virtual ~Branch();
        void setPositions(Eigen::MatrixXd pos);
        Eigen::MatrixXd getPositions();
        void setOrientations(Eigen::MatrixXd orient);
        Eigen::MatrixXd getOrientations();
        void setRadius(Eigen::VectorXd r);
        Eigen::VectorXd getRadius();
        double getAverageRadius();
        void addChildBranch(BranchPtr child); //Note that this method doesn't set this branch as parent to the child. Inconsistent?
        void setChildBranches(branchVector children); //Note that this method doesn't set this branch as parent to the children. Inconsistent?
        void deleteChildBranches();
        branchVector getChildBranches();
        void setParentBranch(BranchPtr parent); //Note that this method doesn't set this branch as a child of the parent. Inconsistent?
        int findGenerationNumber();
        double findBranchRadius();
        BranchPtr getParentBranch();
        void calculateOrientations();
        int findParentIndex(branchVector bv) const;
        void setBronchoscopeRotation(double rotation);
        double getBronchoscopeRotation();
        void removeEqualPositions();
};


}//namespace cx

#endif /* BRANCH_H_ */