CustusX  22.04-rc5
An IGT application
cxBranch.h
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1 /*=========================================================================
2 This file is part of CustusX, an Image Guided Therapy Application.
3 
4 Copyright (c) SINTEF Department of Medical Technology.
5 All rights reserved.
6 
7 CustusX is released under a BSD 3-Clause license.
8 
9 See Lisence.txt (https://github.com/SINTEFMedtek/CustusX/blob/master/License.txt) for details.
10 =========================================================================*/
11 #ifndef BRANCH_H_
12 #define BRANCH_H_
13 
14 #include <vector>
15 #include "cxMesh.h"
16 #include "cxVector3D.h"
17 #include "org_custusx_registration_method_bronchoscopy_Export.h"
18 
19 typedef std::vector<double> dVector;
20 typedef std::vector<dVector> dVectors;
21 
22 
23 namespace cx
24 {
25 
26 class org_custusx_registration_method_bronchoscopy_EXPORT Branch;
27 typedef boost::shared_ptr<class Branch> BranchPtr;
28 typedef std::vector<BranchPtr> branchVector;
29 
30 class Branch
31 {
32  Eigen::MatrixXd mPositions;
33  Eigen::MatrixXd mOrientations;
34  Eigen::VectorXd mRadius;
35  branchVector mChildBranches;
36  BranchPtr mParentBranch;
37  double mBronchoscopeRotation = 0;
38 public:
39  Branch();
40  virtual ~Branch();
41  void setPositions(Eigen::MatrixXd pos);
42  Eigen::MatrixXd getPositions();
43  void setOrientations(Eigen::MatrixXd orient);
44  Eigen::MatrixXd getOrientations();
45  void setRadius(Eigen::VectorXd r);
46  Eigen::VectorXd getRadius();
47  double getAverageRadius();
48  void addChildBranch(BranchPtr child); //Note that this method doesn't set this branch as parent to the child. Inconsistent?
49  void setChildBranches(branchVector children); //Note that this method doesn't set this branch as parent to the children. Inconsistent?
50  void deleteChildBranches();
51  branchVector getChildBranches();
52  void setParentBranch(BranchPtr parent); //Note that this method doesn't set this branch as a child of the parent. Inconsistent?
54  double findBranchRadius();
55  BranchPtr getParentBranch();
56  void calculateOrientations();
57  int findParentIndex(branchVector bv) const;
58  void setBronchoscopeRotation(double rotation);
59  double getBronchoscopeRotation();
60  void removeEqualPositions();
61 };
62 
63 
64 }//namespace cx
65 
66 #endif /* BRANCH_H_ */
67 
68 
69 
void deleteChildBranches()
Definition: cxBranch.cpp:70
void addChildBranch(BranchPtr child)
Definition: cxBranch.cpp:60
void setPositions(Eigen::MatrixXd pos)
Definition: cxBranch.cpp:23
void setRadius(Eigen::VectorXd r)
Definition: cxBranch.cpp:45
branchVector getChildBranches()
Definition: cxBranch.cpp:75
double findBranchRadius()
Definition: cxBranch.cpp:139
int findGenerationNumber()
Definition: cxBranch.cpp:120
void removeEqualPositions()
Definition: cxBranch.cpp:167
double getAverageRadius()
Definition: cxBranch.cpp:55
boost::shared_ptr< class Branch > BranchPtr
Eigen::MatrixXd getOrientations()
Definition: cxBranch.cpp:40
virtual ~Branch()
Definition: cxBranch.cpp:192
int findParentIndex(branchVector bv) const
Branch::findParentIndex Given a vector of branches, find this branch&#39;s parent branch in that vector...
Definition: cxBranch.cpp:109
BranchPtr getParentBranch()
Definition: cxBranch.cpp:84
void setOrientations(Eigen::MatrixXd orient)
Definition: cxBranch.cpp:35
Eigen::VectorXd getRadius()
Definition: cxBranch.cpp:50
Eigen::MatrixXd getPositions()
Definition: cxBranch.cpp:30
std::vector< dVector > dVectors
Definition: cxBranch.h:20
void calculateOrientations()
Definition: cxBranch.cpp:89
double getBronchoscopeRotation()
Definition: cxBranch.cpp:162
std::vector< double > dVector
Definition: cxBranch.h:19
void setBronchoscopeRotation(double rotation)
Definition: cxBranch.cpp:157
void setChildBranches(branchVector children)
Definition: cxBranch.cpp:65
void setParentBranch(BranchPtr parent)
Definition: cxBranch.cpp:80
std::vector< BranchPtr > branchVector
Definition: cxBranch.h:28
Namespace for all CustusX production code.